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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
71
ChIP-seq
30
DNase-seq
24
ATAC-seq
1
FAIRE-seq
Assay category
71
DNA binding
55
DNA accessibility
Target of assay
59
histone
59
histone modification
31
narrow histone mark
28
broad histone mark
12
RNA binding protein
12
transcription factor
2
chromatin remodeller
Date released
47
June, 2019
20
August, 2017
15
October, 2019
14
December, 2017
14
September, 2018
6
November, 2017
5
September, 2017
4
May, 2019
1
November, 2020
Available data
900
bam
872
bigWig
550
fastq
427
bed narrowPeak
401
tsv
153
zippedFastqFolder
140
tagAlign
126
bigBed narrowPeak
62
bed bed3+
50
bed broadPeak
50
bigBed broadPeak
11
bedpe bed3+
10
bed bedMethyl
10
bigBed bedMethyl
10
hic
7
bed bedgraph
6
bed bed3
4
hdf5
3
cool
txt
2
csv
2
ibed
1
tar
Organism
126
Homo sapiens
Biosample type
561
tissue
355
cell line
109
primary cell
17
in vitro differentiated cells
Organ
75
epithelium
22
pancreas
21
vasculature
18
connective tissue
17
blood vessel
16
kidney
16
liver
13
vein
11
brain
9
musculature of body
6
heart
3
eye
Project
126
AMP
Genome assembly (visualization)
120
GRCh38
119
hg19
Lab
126
AMP-T2D consortium
Audit category:
23
inconsistent ontology term
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
files.file_type!
txt
organ_slims!
bone marrow
BIOSAMPLE
ASSAY
126 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
primary cell
skeletal muscle myoblast
14
2
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
+ See 24 more…
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
See all biosamples
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