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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
74
single cell RNA-seq
73
ChIP-seq
71
ATAC-seq
47
WGBS
3
Hi-C
Assay category
155
Transcription
73
DNA binding
71
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Target of assay
59
histone
59
histone modification
32
narrow histone mark
27
broad histone mark
13
control
1
transcription factor
Date released
80
May, 2022
72
September, 2018
41
August, 2017
37
February, 2023
37
July, 2018
33
April, 2018
19
September, 2020
7
August, 2020
6
February, 2021
5
September, 2017
3
August, 2018
3
May, 2021
3
October, 2022
2
October, 2018
1
June, 2018
Available data
258
fastq
197
bam
194
bigWig
108
tsv
80
zippedFastqFolder
70
bed narrowPeak
22
bigBed narrowPeak
3
bedpe bed3+
3
cool
3
hic
3
tagAlign
Organism
349
Homo sapiens
Biosample type
466
tissue
346
primary cell
76
cell line
3
in vitro differentiated cells
Organ
430
epithelium
349
pancreas
136
connective tissue
37
vasculature
36
kidney
31
blood vessel
29
embryo
29
liver
22
vein
21
brain
14
heart
14
musculature of body
8
blood
8
bodily fluid
5
eye
3
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
197
AMP
152
HPAP
Genome assembly (visualization)
194
GRCh38
187
hg19
Lab
197
AMP-T2D consortium
152
Klaus Kaestner, Upenn
Audit category:
5
inconsistent ontology term
3
audit script error
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
month_released!
November, 2019
BIOSAMPLE
ASSAY
349 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
WGBS
Hi-C
primary cell
pancreatic alpha cell
52
12
13
35
31
1
pancreatic beta cell
21
12
13
23
16
1
pancreatic acinar cell
4
12
8
9
1
pancreatic ductal cell
4
10
13
4
pancreatic endocrine cell
23
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in vitro differentiated cells
pancreatic PP cell
3
See all biosamples
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