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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
total RNA-seq
4
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
Hi-C
1
RRBS
Assay category
5
Transcription
4
DNA binding
3
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
15
histone
histone modification
8
broad histone mark
7
narrow histone mark
2
RNA binding protein
2
control
2
transcription factor
1
chromatin remodeller
Date released
5
December, 2019
3
December, 2017
2
July, 2019
2
June, 2019
1
August, 2021
1
October, 2019
Available data
12
bam
10
bigWig
5
bed narrowPeak
5
tsv
4
bigBed narrowPeak
3
bed bed3+
3
fastq
2
bed broadPeak
2
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
tagAlign
Organism
14
Homo sapiens
Biosample type
381
cell line
291
tissue
11
primary cell
3
in vitro differentiated cells
Organ
349
epithelium
290
pancreas
91
connective tissue
26
kidney
20
vasculature
18
brain
17
embryo
15
blood vessel
14
liver
12
heart
8
blood
8
bodily fluid
7
vein
6
musculature of body
4
eye
3
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
14
AMP
Genome assembly (visualization)
12
hg19
10
GRCh38
Lab
14
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
histone modification
other post-translational modification
BIOSAMPLE
ASSAY
14 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
primary cell
hepatocyte
5
1
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
3
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