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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
ChIP-seq
136
total RNA-seq
42
ATAC-seq
9
pCHi-C
5
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNase-seq
Assay category
190
DNA binding
140
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
114
histone
114
histone modification
57
broad histone mark
56
narrow histone mark
49
transcription factor
38
control
RNA binding protein
3
chromatin remodeller
Date released
127
May, 2021
64
August, 2017
44
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
12
March, 2020
8
October, 2019
5
January, 2018
5
November, 2019
2
December, 2019
2
March, 2023
1
August, 2018
Available data
288
bam
256
bigWig
139
fastq
135
tsv
128
bed narrowPeak
40
tagAlign
28
bed bed3+
15
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
391
Homo sapiens
Biosample type
2747
tissue
primary cell
594
cell line
383
in vitro differentiated cells
10
stem cell
Organ
94
connective tissue
29
embryo
22
epithelium
13
liver
3
pancreas
1
adipose tissue
1
heart
Project
391
AMP
2
community
Genome assembly (visualization)
294
hg19
262
GRCh38
5
hg18
Lab
342
AMP-T2D consortium
42
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
2
Anna Gloyn, Oxford
Audit category:
116
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
19
inconsistent control read length
biosample_type!
primary cell
target.investigated_as!
RNA binding protein
nucleotide modification
BIOSAMPLE
ASSAY
393 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
63
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
35
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
+ See 31 more…
stem cell
hESC
3
1
SB Ad3.1
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
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