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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
26
ATAC-seq
9
pCHi-C
9
total RNA-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
Assay category
84
DNA binding
26
DNA accessibility
13
Transcription
4
3D chromatin structure
Target of assay
38
control
34
histone
34
histone modification
19
broad histone mark
15
narrow histone mark
12
transcription factor
5
RNA binding protein
Date released
43
May, 2021
20
August, 2017
20
August, 2021
13
February, 2023
10
December, 2017
10
March, 2020
8
February, 2018
5
November, 2019
February, 2021
4
October, 2019
2
December, 2019
2
March, 2023
1
August, 2018
Available data
272
bam
bigWig
145
fastq
134
bed narrowPeak
113
tsv
40
tagAlign
28
bed bed3+
17
bigBed narrowPeak
7
bedpe bed3+
5
bed bed3
4
hic
3
bed bedgraph
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
136
Homo sapiens
Biosample type
904
tissue
429
primary cell
131
in vitro differentiated cells
127
cell line
7
stem cell
Organ
37
connective tissue
8
embryo
4
epithelium
1
adipose tissue
1
liver
1
pancreas
Project
136
AMP
2
community
Genome assembly (visualization)
40
hg19
23
GRCh38
Lab
92
AMP-T2D consortium
42
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
Audit category:
23
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bigWig
month_released!
February, 2021
BIOSAMPLE
ASSAY
138 results
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ChIP-seq
ATAC-seq
pCHi-C
total RNA-seq
Hi-C
Capture-C
single cell RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
in vitro differentiated cells
embryonic stem cell
38
1
5
adipocyte
20
1
1
1
neural progenitor cell
8
10
cardiomyocytes (cardiac muscle cell)
1
2
2
2
pancreatic endoderm
6
+ See 16 more…
stem cell
SB Ad3.1
1
1
hESC
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
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