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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
201
ChIP-seq
136
total RNA-seq
42
ATAC-seq
9
pCHi-C
5
GRO-seq
4
Hi-C
2
Capture-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNase-seq
Assay category
201
DNA binding
138
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
114
histone
114
histone modification
57
broad histone mark
56
narrow histone mark
49
transcription factor
38
control
11
RNA binding protein
3
chromatin remodeller
Date released
132
May, 2021
68
August, 2017
46
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
12
March, 2020
8
October, 2019
5
January, 2018
5
November, 2019
December, 2019
2
March, 2023
1
August, 2018
Available data
294
bam
262
bigWig
145
fastq
134
bed narrowPeak
133
tsv
40
tagAlign
28
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
400
Homo sapiens
Biosample type
2734
tissue
1080
primary cell
662
cell line
392
in vitro differentiated cells
10
stem cell
Organ
98
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
400
AMP
2
community
Genome assembly (visualization)
300
hg19
268
GRCh38
5
hg18
Lab
346
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
2
Anna Gloyn, Oxford
Audit category:
114
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
19
inconsistent control read length
files.file_type!
cool
lab.title!
Karen Mohlke, UNC
month_released!
December, 2019
BIOSAMPLE
ASSAY
402 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
CRISPR RNA-seq
CRISPRi RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
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stem cell
hESC
3
1
SB Ad3.1
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
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