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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
125
ChIP-seq
112
total RNA-seq
29
ATAC-seq
5
GRO-seq
1
DNase-seq
Assay category
125
DNA binding
112
Transcription
30
DNA accessibility
Target of assay
65
histone
65
histone modification
37
transcription factor
34
narrow histone mark
30
broad histone mark
23
control
6
RNA binding protein
3
chromatin remodeller
Date released
90
May, 2021
54
August, 2017
46
December, 2017
39
August, 2021
February, 2018
22
February, 2021
6
October, 2019
5
January, 2018
5
November, 2019
3
February, 2023
2
March, 2020
Available data
255
bam
231
bigWig
120
tsv
118
bed narrowPeak
106
fastq
40
tagAlign
28
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
272
Homo sapiens
Biosample type
1995
tissue
658
primary cell
600
cell line
268
in vitro differentiated cells
4
stem cell
Organ
63
connective tissue
24
epithelium
16
embryo
15
liver
3
pancreas
1
heart
Project
272
AMP
Genome assembly (visualization)
248
hg19
237
GRCh38
5
hg18
Lab
262
AMP-T2D consortium
5
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
102
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
month_released!
February, 2018
BIOSAMPLE
ASSAY
272 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
3
59
adipocyte
53
4
3
1
neural progenitor cell
20
7
10
cardiac precursors (cardiac muscle cell)
19
1
hepatocyte
15
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stem cell
hESC
3
1
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