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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
4
ATAC-seq
2
Capture-C
Assay category
22
DNA binding
4
DNA accessibility
Target of assay
10
histone
10
histone modification
6
control
6
transcription factor
5
broad histone mark
5
narrow histone mark
Date released
15
December, 2017
7
August, 2017
4
February, 2023
2
August, 2021
Available data
294
bam
262
bigWig
145
fastq
135
tsv
134
bed narrowPeak
40
tagAlign
28
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
28
Homo sapiens
Biosample type
204
tissue
35
primary cell
25
in vitro differentiated cells
3
cell line
3
stem cell
Organ
13
connective tissue
3
embryo
Project
28
AMP
Genome assembly (visualization)
28
hg19
22
GRCh38
Lab
26
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
Audit category:
10
inconsistent control read length
organ_slims!
spleen
vein
BIOSAMPLE
ASSAY
28 results
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ChIP-seq
ATAC-seq
Capture-C
in vitro differentiated cells
adipocyte
7
1
1
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
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stem cell
hESC
3
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