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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
724
ChIP-seq
Assay category
724
DNA binding
Target of assay
725
histone modification
724
histone
371
narrow histone mark
352
broad histone mark
220
control
140
transcription factor
37
RNA binding protein
4
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
168
October, 2019
160
August, 2017
89
May, 2019
70
November, 2017
60
April, 2019
35
May, 2024
30
October, 2018
27
May, 2020
20
May, 2021
16
February, 2018
15
December, 2017
14
August, 2021
12
October, 2017
6
January, 2019
2
March, 2020
Available data
584
bigWig
582
bed narrowPeak
529
bam
312
bigBed narrowPeak
211
tagAlign
124
fastq
35
bed broadPeak
20
bed bed3+
1
tagAlign bed3+
Organism
718
Homo sapiens
Biosample type
627
tissue
171
primary cell
97
in vitro differentiated cells
cell line
2
stem cell
Organ
184
brain
95
heart
81
liver
74
pancreas
70
connective tissue
54
blood vessel
54
vasculature
49
limb
32
adipose tissue
25
musculature of body
24
nerve
20
artery
20
kidney
epithelium
12
embryo
6
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
722
AMP
2
T1D
Genome assembly (visualization)
556
GRCh38
499
hg19
Lab
669
AMP-T2D consortium
35
Patrick T. Ellinor, Broad
20
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
9
missing controlled_by
Audit category:
12
inconsistent control read length
1
inconsistent assembly
biosample_type!
cell line
organ_slims!
epithelium
BIOSAMPLE
ASSAY
724 results
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Clear Filters
ChIP-seq
tissue
liver
64
islet of Langerhans
51
left cardiac atrium
35
subcutaneous abdominal adipose tissue
31
heart left ventricle
24
+ See 100 more…
in vitro differentiated cells
adipocyte
37
embryonic stem cell
22
neural progenitor cell
14
pancreatic endoderm
10
definitive endodermal cell
4
+ See 4 more…
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