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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1167
total RNA-seq
335
ChIP-seq
298
ATAC-seq
182
single cell RNA-seq
87
RNA microarray
30
pCHi-C
27
WGBS
27
snATAC-seq
20
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
GRO-seq
4
MeRIP-seq
3
DNase-seq
3
snDrop-seq
Assay category
1365
Transcription
335
DNA binding
332
DNA accessibility
38
DNA methylation
20
3D chromatin structure
Target of assay
720
histone modification
histone
369
narrow histone mark
349
broad histone mark
212
control
124
transcription factor
37
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
571
February, 2021
255
August, 2021
171
August, 2017
166
May, 2020
151
May, 2021
120
July, 2018
107
February, 2023
78
October, 2019
77
July, 2019
65
May, 2022
58
December, 2017
47
September, 2023
46
March, 2020
45
November, 2019
44
October, 2018
26
May, 2019
25
February, 2020
23
February, 2018
20
April, 2019
19
April, 2020
17
November, 2018
15
May, 2023
12
November, 2017
11
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
January, 2018
5
December, 2019
5
March, 2019
5
May, 2024
4
November, 2020
September, 2017
1
August, 2018
1
August, 2022
1
January, 2019
Available data
1648
bam
1432
bigWig
1207
tsv
519
bed narrowPeak
374
fastq
254
bigBed narrowPeak
bed bed3+
179
bed broadPeak
177
bigBed broadPeak
160
txt
66
tagAlign
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
17
bedpe bed3+
15
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
Organism
2215
Homo sapiens
Biosample type
1953
tissue
812
primary cell
621
cell line
265
in vitro differentiated cells
7
stem cell
Organ
555
connective tissue
451
adipose tissue
415
pancreas
289
liver
211
kidney
192
heart
158
bone element
74
blood vessel
74
vasculature
54
brain
51
eye
49
artery
37
limb
24
epithelium
24
musculature of body
20
lung
18
spleen
17
nerve
16
embryo
16
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2123
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1350
GRCh38
1344
hg19
4
hg18
Lab
1869
AMP-T2D consortium
142
Katalin Susztak, Upenn
79
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
5
Struan F.A. Grant, CHOP
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
199
inconsistent ontology term
27
inconsistent control
10
audit script error
Audit category:
13
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
bed bed3+
month_released!
September, 2017
target.investigated_as!
histone
BIOSAMPLE
ASSAY
2218 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
GRO-seq
MeRIP-seq
DNase-seq
snDrop-seq
tissue
islet of Langerhans
292
7
68
6
4
7
3
1
1
4
1
adipose tissue
382
1
3
1
3
liver
167
78
20
1
1
3
1
1
1
kidney
49
7
75
64
6
1
1
1
bone element
84
+ See 99 more…
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
5
23
7
1
embryonic stem cell
7
18
6
1
neural progenitor cell
7
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
+ See 31 more…
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