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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1162
total RNA-seq
1061
ChIP-seq
293
ATAC-seq
181
single cell RNA-seq
147
DNase-seq
87
RNA microarray
27
snATAC-seq
26
WGBS
26
pCHi-C
15
small RNA-seq
7
RRBS
4
FAIRE-seq
4
GRO-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
2
Hi-C
Assay category
1358
Transcription
1061
DNA binding
471
DNA accessibility
33
DNA methylation
2
3D chromatin structure
Target of assay
703
histone modification
702
histone
368
narrow histone mark
333
broad histone mark
217
control
143
transcription factor
39
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
571
February, 2021
326
August, 2017
270
August, 2021
247
October, 2019
193
May, 2020
172
May, 2021
131
June, 2019
120
July, 2018
111
February, 2023
108
May, 2019
91
December, 2017
82
November, 2017
80
April, 2019
74
October, 2018
70
July, 2019
64
May, 2022
47
September, 2023
44
November, 2019
40
May, 2024
39
February, 2018
34
March, 2020
26
November, 2018
23
February, 2020
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
December, 2019
5
January, 2018
5
March, 2019
4
November, 2020
1
August, 2022
Available data
2139
bam
1960
bigWig
1200
tsv
1053
bed narrowPeak
534
bigBed narrowPeak
499
fastq
249
tagAlign
197
bed bed3+
165
bed broadPeak
159
txt
145
bigBed broadPeak
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
bedpe bed3+
13
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
3042
Homo sapiens
Biosample type
2664
tissue
1070
primary cell
660
cell line
387
in vitro differentiated cells
10
stem cell
Organ
642
connective tissue
500
pancreas
487
adipose tissue
375
liver
311
heart
299
kidney
249
brain
158
bone element
132
blood vessel
132
vasculature
122
limb
musculature of body
73
artery
56
eye
43
nerve
39
epithelium
29
embryo
24
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2954
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
2068
GRCh38
1965
hg19
4
hg18
Lab
2647
AMP-T2D consortium
142
Katalin Susztak, Upenn
99
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
199
inconsistent ontology term
27
inconsistent control
10
audit script error
Audit category:
28
missing controlled_by
Audit category:
23
inconsistent control read length
1
inconsistent assembly
files.file_type!
bedpe bed3+
month_released!
October, 2017
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
3051 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
RRBS
FAIRE-seq
GRO-seq
MeRIP-seq
snDrop-seq
Capture-C
Hi-C
tissue
islet of Langerhans
292
71
67
6
1
7
4
1
1
4
1
adipose tissue
382
2
3
3
1
liver
167
145
20
1
2
3
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
+ See 168 more…
in vitro differentiated cells
adipocyte
5
67
8
1
1
cardiomyocytes
59
3
embryonic stem cell
7
40
6
1
neural progenitor cell
7
21
10
pancreatic endoderm
4
18
1
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