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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
359
ChIP-seq
247
ATAC-seq
175
single cell RNA-seq
143
total RNA-seq
87
RNA microarray
29
pCHi-C
27
snATAC-seq
14
Hi-C
11
WGBS
7
RRBS
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
1
DNase-seq
Assay category
359
DNA binding
318
Transcription
275
DNA accessibility
18
DNA methylation
14
3D chromatin structure
Target of assay
220
control
134
histone
134
histone modification
69
narrow histone mark
65
broad histone mark
13
transcription factor
RNA binding protein
2
nucleotide modification
Date released
249
August, 2021
113
August, 2017
108
February, 2023
105
February, 2021
86
October, 2019
47
September, 2023
44
May, 2022
40
May, 2021
32
March, 2020
29
October, 2018
26
November, 2019
25
November, 2017
23
February, 2020
23
May, 2020
21
December, 2017
21
May, 2019
19
April, 2020
15
May, 2023
14
April, 2019
10
July, 2019
9
October, 2017
8
February, 2018
8
January, 2021
6
September, 2017
5
December, 2019
5
March, 2019
4
December, 2018
4
July, 2018
4
November, 2020
3
November, 2018
1
August, 2018
1
August, 2022
1
January, 2019
Available data
2125
bam
bigWig
1200
tsv
1033
bed narrowPeak
518
bigBed narrowPeak
495
fastq
263
tagAlign
195
bed bed3+
169
bed broadPeak
159
txt
145
bigBed broadPeak
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
15
bedpe bed3+
13
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
1106
Homo sapiens
Biosample type
979
tissue
472
primary cell
138
cell line
130
in vitro differentiated cells
7
stem cell
Organ
207
kidney
156
heart
133
pancreas
106
connective tissue
100
bone element
97
liver
66
adipose tissue
63
blood vessel
63
brain
63
vasculature
53
eye
46
artery
31
limb
musculature of body
20
lung
19
epithelium
16
skeleton
12
nerve
9
spleen
8
embryo
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1014
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
169
GRCh38
146
hg19
Lab
779
AMP-T2D consortium
142
Katalin Susztak, Upenn
89
Kyle Gaulton, UCSD
47
KPMP
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
2
Struan F.A. Grant, CHOP
1
Maike Sander, UCSD
Audit category:
110
inconsistent ontology term
10
audit script error
Audit category:
2
missing controlled_by
files.file_type!
bigWig
organ_slims!
musculature of body
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
1109 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
RNA microarray
pCHi-C
snATAC-seq
Hi-C
WGBS
RRBS
MeRIP-seq
snDrop-seq
Capture-C
DNase-seq
tissue
kidney
6
75
64
49
6
1
1
islet of Langerhans
42
65
32
4
7
3
1
4
liver
63
1
20
1
1
3
1
bone element
84
coronary artery
2
35
1
+ See 88 more…
in vitro differentiated cells
embryonic stem cell
33
5
1
adipocyte
20
5
1
1
neural progenitor cell
8
10
cardiomyocytes (cardiac muscle cell)
1
2
2
2
pancreatic endoderm
6
+ See 16 more…
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