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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1110
total RNA-seq
1084
ChIP-seq
226
ATAC-seq
179
DNase-seq
86
RNA microarray
76
single cell RNA-seq
30
pCHi-C
27
WGBS
22
snATAC-seq
18
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
GRO-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1202
Transcription
1084
DNA binding
431
DNA accessibility
38
DNA methylation
18
3D chromatin structure
Target of assay
726
histone modification
725
histone
372
narrow histone mark
352
broad histone mark
217
control
143
transcription factor
39
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
571
February, 2021
352
August, 2017
August, 2021
250
October, 2019
193
May, 2020
172
May, 2021
163
June, 2019
120
July, 2018
115
May, 2019
111
February, 2023
91
December, 2017
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
39
February, 2018
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
January, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
November, 2020
1
August, 2018
1
August, 2022
Available data
2161
bam
2009
bigWig
1101
tsv
1027
bed narrowPeak
578
bigBed narrowPeak
518
fastq
258
tagAlign
228
bed bed3+
214
bed broadPeak
177
bigBed broadPeak
103
txt
25
bed bedMethyl
25
bigBed bedMethyl
16
bedpe bed3+
14
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
2892
Homo sapiens
Biosample type
2548
tissue
1083
primary cell
615
cell line
352
in vitro differentiated cells
10
stem cell
Organ
639
connective tissue
506
pancreas
488
adipose tissue
376
liver
265
brain
222
heart
171
kidney
158
bone element
127
blood vessel
127
vasculature
122
limb
82
musculature of body
71
artery
56
eye
43
nerve
39
epithelium
29
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2803
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
2030
GRCh38
2018
hg19
4
hg18
Lab
2628
AMP-T2D consortium
99
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
14
Katalin Susztak, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
206
inconsistent ontology term
27
inconsistent control
11
audit script error
Audit category:
32
missing controlled_by
Audit category:
23
inconsistent control read length
1
inconsistent assembly
files.file_type!
tar
vcf
month_released!
August, 2021
BIOSAMPLE
ASSAY
2900 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
pCHi-C
WGBS
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
GRO-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
291
71
68
1
6
4
7
2
1
1
4
adipose tissue
382
2
3
1
3
liver
167
145
20
2
1
1
3
1
1
1
kidney
27
11
13
56
1
1
bone element
84
+ See 170 more…
in vitro differentiated cells
adipocyte
5
67
7
1
cardiomyocytes
59
3
embryonic stem cell
7
40
6
1
pancreatic endoderm
4
18
1
cardiac precursors (cardiac muscle cell)
19
1
1
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