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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1028
total RNA-seq
477
ChIP-seq
83
ATAC-seq
17
WGBS
16
small RNA-seq
6
single cell RNA-seq
2
Capture-C
1
snATAC-seq
Assay category
1050
Transcription
477
DNA binding
84
DNA accessibility
17
DNA methylation
Target of assay
221
histone modification
220
histone
197
control
171
narrow histone mark
59
transcription factor
48
broad histone mark
7
RNA binding protein
2
chromatin remodeller
Date released
474
February, 2021
201
August, 2017
193
May, 2020
144
October, 2019
123
May, 2021
116
July, 2018
62
July, 2019
44
November, 2019
41
December, 2017
39
August, 2021
39
February, 2018
29
October, 2018
25
May, 2022
22
May, 2019
15
April, 2019
12
November, 2017
11
March, 2020
9
November, 2018
9
October, 2017
6
April, 2018
6
September, 2017
4
December, 2018
4
February, 2023
1
January, 2019
1
March, 2019
Available data
2198
bam
2031
bigWig
1207
tsv
1116
bed narrowPeak
bigBed narrowPeak
518
fastq
278
tagAlign
230
bed bed3+
214
bed broadPeak
177
bigBed broadPeak
160
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
17
bedpe bed3+
15
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
1629
Homo sapiens
Biosample type
1348
tissue
506
primary cell
282
in vitro differentiated cells
229
cell line
3
stem cell
Organ
553
connective tissue
431
adipose tissue
370
pancreas
240
liver
110
brain
66
bone element
45
heart
30
limb
28
embryo
25
blood vessel
25
vasculature
16
nerve
11
kidney
11
spleen
10
epithelium
9
artery
8
skeleton
7
musculature of body
1
pituitary gland
Project
1628
AMP
2
T1D
Genome assembly (visualization)
1412
hg19
1398
GRCh38
Lab
1603
AMP-T2D consortium
24
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
1
Mark McCarthy, Oxford
Audit category:
106
inconsistent ontology term
1
audit script error
Audit category:
28
missing controlled_by
Audit category:
17
inconsistent control read length
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
1630 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
Capture-C
snATAC-seq
tissue
adipose tissue
381
1
2
islet of Langerhans
266
30
38
6
liver
147
84
1
bone tissue
58
body of pancreas
2
9
4
2
2
+ See 120 more…
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
53
1
1
neural progenitor cell
7
20
10
pancreatic endoderm
4
18
cardiac precursors (cardiac muscle cell)
19
1
+ See 27 more…
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