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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
648
ChIP-seq
191
ATAC-seq
173
DNase-seq
4
FAIRE-seq
Assay category
648
DNA binding
368
DNA accessibility
Target of assay
544
histone modification
543
histone
288
narrow histone mark
254
broad histone mark
104
transcription factor
29
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
Date released
160
June, 2019
132
October, 2019
109
August, 2017
89
August, 2021
70
December, 2017
65
April, 2019
58
November, 2017
54
May, 2019
45
October, 2018
40
May, 2024
38
May, 2022
30
February, 2023
27
May, 2020
25
November, 2019
17
November, 2018
16
February, 2018
12
October, 2017
8
February, 2021
6
January, 2019
5
July, 2019
5
May, 2021
3
December, 2018
2
March, 2020
Available data
2111
bam
1961
bigWig
1193
tsv
1016
bed narrowPeak
518
fastq
516
bigBed narrowPeak
278
tagAlign
225
bed bed3+
209
bed broadPeak
172
bigBed broadPeak
160
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
16
bedpe bed3+
14
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
1010
Homo sapiens
Biosample type
884
tissue
392
cell line
274
primary cell
132
in vitro differentiated cells
2
stem cell
Organ
192
brain
173
heart
153
kidney
127
liver
125
pancreas
100
blood vessel
vasculature
92
limb
62
artery
58
connective tissue
51
musculature of body
30
epithelium
30
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
8
bone element
8
skeleton
1
pituitary gland
Project
1014
AMP
2
T1D
Genome assembly (visualization)
911
GRCh38
843
hg19
Lab
870
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
27
inconsistent control
17
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
23
inconsistent control read length
1
inconsistent assembly
organ_slims!
vasculature
BIOSAMPLE
ASSAY
1016 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver
82
20
2
kidney
20
64
13
1
islet of Langerhans
20
37
1
1
left cardiac atrium
40
1
body of pancreas
26
4
4
+ See 126 more…
in vitro differentiated cells
adipocyte
42
1
1
neural progenitor cell
13
10
hepatocyte
14
pancreatic endoderm
12
definitive endodermal cell
6
+ See 13 more…
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