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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
320
ChIP-seq
112
total RNA-seq
28
ATAC-seq
10
DNase-seq
8
WGBS
6
single cell RNA-seq
4
GRO-seq
3
RRBS
2
FAIRE-seq
1
pCHi-C
Assay category
320
DNA binding
118
Transcription
40
DNA accessibility
11
DNA methylation
Target of assay
133
histone modification
132
histone
106
transcription factor
81
control
72
broad histone mark
59
narrow histone mark
21
RNA binding protein
5
chromatin remodeller
Date released
229
August, 2017
91
December, 2017
58
October, 2018
39
February, 2018
24
May, 2022
17
November, 2018
16
October, 2017
6
April, 2018
6
September, 2017
4
January, 2018
2
July, 2018
1
August, 2018
1
March, 2019
Available data
2174
bam
2015
bigWig
1206
tsv
1102
bed narrowPeak
565
bigBed narrowPeak
494
fastq
278
tagAlign
229
bed bed3+
213
bed broadPeak
176
bigBed broadPeak
160
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
17
bedpe bed3+
15
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
487
Homo sapiens
Biosample type
427
cell line
402
primary cell
353
tissue
141
in vitro differentiated cells
4
stem cell
Organ
213
pancreas
98
connective tissue
98
liver
44
adipose tissue
27
embryo
spleen
19
epithelium
12
brain
2
musculature of body
Project
494
AMP
Genome assembly (visualization)
398
hg19
382
GRCh38
4
hg18
Lab
468
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
32
missing controlled_by
Audit category:
23
inconsistent control read length
1
inconsistent assembly
month_released!
August, 2020
organ_slims!
spleen
BIOSAMPLE
ASSAY
494 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
GRO-seq
RRBS
FAIRE-seq
pCHi-C
tissue
islet of Langerhans
28
97
20
1
6
1
liver
67
2
1
1
body of pancreas
33
4
2
2
pancreas
16
2
1
omental fat pad
11
1
1
+ See 7 more…
in vitro differentiated cells
adipocyte
53
1
pancreatic endoderm
18
4
1
hepatocyte
15
definitive endodermal cell
8
2
1
primitive gut cell
8
2
1
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