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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1068
ChIP-seq
684
total RNA-seq
256
ATAC-seq
179
DNase-seq
176
single cell RNA-seq
29
pCHi-C
27
WGBS
20
Hi-C
18
snATAC-seq
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
GRO-seq
4
MeRIP-seq
3
RNA microarray
2
Capture-C
Assay category
1068
DNA binding
876
Transcription
457
DNA accessibility
38
DNA methylation
20
3D chromatin structure
Target of assay
720
histone modification
719
histone
369
narrow histone mark
349
broad histone mark
219
control
131
transcription factor
34
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
February, 2021
352
August, 2017
271
August, 2021
250
October, 2019
193
May, 2020
163
June, 2019
123
May, 2021
120
July, 2018
115
May, 2019
93
February, 2023
91
December, 2017
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
48
March, 2020
47
September, 2023
45
November, 2019
42
May, 2022
40
May, 2024
39
February, 2018
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
January, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
November, 2020
1
August, 2018
1
August, 2022
Available data
1700
bam
1560
bigWig
1090
bed narrowPeak
733
tsv
578
bigBed narrowPeak
494
fastq
278
tagAlign
230
bed bed3+
214
bed broadPeak
177
bigBed broadPeak
65
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
17
bedpe bed3+
15
hic
10
bed bed3
3
bed bedgraph
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
2492
Homo sapiens
Biosample type
2180
tissue
801
primary cell
561
cell line
321
in vitro differentiated cells
10
stem cell
Organ
457
pancreas
375
liver
314
heart
291
kidney
265
brain
192
connective tissue
133
blood vessel
133
vasculature
116
limb
103
adipose tissue
82
musculature of body
73
artery
56
eye
43
nerve
39
epithelium
29
embryo
25
spleen
20
lung
18
ureter
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2431
AMP
47
KPMP
19
LungMap
4
T1D
Genome assembly (visualization)
1650
GRCh38
1551
hg19
4
hg18
Lab
2194
AMP-T2D consortium
142
Katalin Susztak, Upenn
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
104
inconsistent ontology term
27
inconsistent control
6
audit script error
Audit category:
32
missing controlled_by
Audit category:
23
inconsistent control read length
1
inconsistent assembly
lab.title!
Kyle Gaulton, UCSD
month_released!
February, 2021
BIOSAMPLE
ASSAY
2501 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
pCHi-C
WGBS
Hi-C
snATAC-seq
small RNA-seq
RRBS
FAIRE-seq
GRO-seq
MeRIP-seq
RNA microarray
Capture-C
tissue
islet of Langerhans
71
281
39
1
6
4
3
1
1
1
4
liver
145
167
20
2
1
3
1
1
1
kidney
27
49
75
13
59
1
6
1
1
heart left ventricle
35
3
2
3
18
1
4
1
1
left cardiac atrium
40
1
18
+ See 162 more…
in vitro differentiated cells
adipocyte
67
1
4
1
1
cardiomyocytes
3
59
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
hepatocyte
15
+ See 31 more…
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