Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1080
total RNA-seq
344
ChIP-seq
179
DNase-seq
163
ATAC-seq
115
single cell RNA-seq
87
RNA microarray
29
pCHi-C
27
WGBS
17
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
GRO-seq
3
snDrop-seq
2
snATAC-seq
Assay category
1211
Transcription
348
DNA accessibility
344
DNA binding
38
DNA methylation
17
3D chromatin structure
Target of assay
685
histone modification
histone
354
narrow histone mark
329
broad histone mark
217
control
126
transcription factor
29
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
Date released
571
February, 2021
192
August, 2017
166
May, 2020
163
June, 2019
123
August, 2021
122
May, 2021
120
July, 2018
90
February, 2023
82
October, 2019
77
July, 2019
62
December, 2017
46
March, 2020
45
November, 2019
44
October, 2018
26
May, 2019
26
November, 2018
25
February, 2020
23
February, 2018
20
April, 2019
12
November, 2017
10
October, 2017
7
December, 2018
6
April, 2018
6
January, 2018
6
September, 2017
5
December, 2019
2
May, 2022
1
August, 2018
1
August, 2022
1
January, 2019
1
May, 2023
Available data
1629
bam
1396
bigWig
1206
tsv
408
bed narrowPeak
354
fastq
254
bigBed narrowPeak
208
bed bed3+
177
bed broadPeak
177
bigBed broadPeak
94
txt
66
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
16
bedpe bed3+
13
hic
10
bed bed3
6
csv
4
bed bedgraph
2
ibed
Organism
2079
Homo sapiens
Biosample type
1833
tissue
580
cell line
401
primary cell
248
in vitro differentiated cells
6
stem cell
Organ
570
connective tissue
457
adipose tissue
371
pancreas
255
liver
214
heart
158
bone element
90
kidney
81
brain
79
blood vessel
79
vasculature
73
limb
57
musculature of body
54
eye
53
artery
24
epithelium
19
nerve
19
spleen
18
ureter
17
embryo
16
skeleton
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2079
AMP
2
T1D
Genome assembly (visualization)
1483
hg19
1470
GRCh38
4
hg18
Lab
2081
AMP-T2D consortium
142
Katalin Susztak, Upenn
79
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
5
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
201
inconsistent ontology term
27
inconsistent control
11
audit script error
Audit category:
23
missing controlled_by
Audit category:
10
inconsistent control read length
target.investigated_as!
histone
BIOSAMPLE
ASSAY
2081 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
GRO-seq
snDrop-seq
snATAC-seq
tissue
adipose tissue
382
1
3
1
3
islet of Langerhans
280
20
1
34
6
4
1
1
1
1
liver
147
81
2
1
1
3
1
1
1
bone element
84
bone tissue
58
+ See 118 more…
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
5
30
1
7
neural progenitor cell
7
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
pancreatic endoderm
4
8
1
+ See 28 more…
See all biosamples
Download