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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
985
ChIP-seq
418
total RNA-seq
228
ATAC-seq
170
single cell RNA-seq
29
pCHi-C
23
WGBS
17
snATAC-seq
16
Hi-C
14
small RNA-seq
13
DNase-seq
9
RRBS
4
GRO-seq
3
RNA microarray
2
Capture-C
2
FAIRE-seq
Assay category
985
DNA binding
602
Transcription
260
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
666
histone modification
665
histone
346
narrow histone mark
318
broad histone mark
194
control
125
transcription factor
31
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
Date released
February, 2021
269
August, 2021
247
October, 2019
205
August, 2017
193
May, 2020
June, 2019
132
May, 2021
113
May, 2019
93
February, 2023
91
December, 2017
82
November, 2017
80
April, 2019
71
July, 2019
47
September, 2023
42
May, 2022
40
May, 2024
39
February, 2018
39
March, 2020
24
February, 2020
23
October, 2018
19
April, 2020
19
November, 2018
18
October, 2017
15
May, 2023
7
December, 2018
7
January, 2019
6
January, 2018
6
November, 2019
5
December, 2019
1
August, 2018
Available data
1133
bam
1031
bigWig
824
bed narrowPeak
458
tsv
357
bigBed narrowPeak
305
fastq
259
tagAlign
65
txt
64
xls
44
bed bed3+
35
bed broadPeak
19
bed bedMethyl
19
bigBed bedMethyl
14
bedpe bed3+
12
bigBed broadPeak
12
hic
10
bed bed3
3
bed bedgraph
2
ibed
1
tagAlign bed3+
Organism
1931
Homo sapiens
Biosample type
1568
tissue
645
primary cell
500
cell line
365
in vitro differentiated cells
10
stem cell
Organ
pancreas
375
liver
287
heart
240
brain
223
kidney
191
connective tissue
130
blood vessel
130
vasculature
102
adipose tissue
84
limb
71
artery
53
eye
50
musculature of body
43
nerve
39
epithelium
29
embryo
25
spleen
20
lung
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1866
AMP
47
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
1103
GRCh38
1014
hg19
4
hg18
Lab
1590
AMP-T2D consortium
142
Katalin Susztak, Upenn
48
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
103
inconsistent ontology term
27
inconsistent control
5
audit script error
Audit category:
22
missing controlled_by
Audit category:
18
inconsistent control read length
month_released!
February, 2021
June, 2019
organ_slims!
pancreas
BIOSAMPLE
ASSAY
1933 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
pCHi-C
WGBS
snATAC-seq
Hi-C
small RNA-seq
DNase-seq
RRBS
GRO-seq
RNA microarray
Capture-C
FAIRE-seq
tissue
liver
145
167
20
1
3
1
1
2
1
kidney
27
49
75
59
6
1
1
1
heart left ventricle
35
3
2
18
1
4
1
1
left cardiac atrium
40
18
islet of Langerhans
21
14
10
4
+ See 142 more…
in vitro differentiated cells
adipocyte
67
1
4
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
+ See 30 more…
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