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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1136
total RNA-seq
990
ChIP-seq
296
ATAC-seq
182
single cell RNA-seq
179
DNase-seq
87
RNA microarray
30
pCHi-C
28
snATAC-seq
16
Hi-C
15
WGBS
5
RRBS
4
GRO-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
2
FAIRE-seq
Assay category
1318
Transcription
990
DNA binding
505
DNA accessibility
20
DNA methylation
16
3D chromatin structure
Target of assay
651
histone modification
650
histone
346
narrow histone mark
303
broad histone mark
202
control
139
transcription factor
35
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
571
February, 2021
352
August, 2017
271
August, 2021
250
October, 2019
193
May, 2020
172
May, 2021
163
June, 2019
120
July, 2018
May, 2019
111
February, 2023
91
December, 2017
82
November, 2017
80
April, 2019
July, 2019
74
October, 2018
66
May, 2022
48
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
39
February, 2018
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
January, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
November, 2020
1
August, 2018
1
August, 2022
Available data
2019
bam
1875
bigWig
1160
tsv
1016
bed narrowPeak
518
fastq
483
bigBed narrowPeak
278
tagAlign
230
bed bed3+
214
bed broadPeak
177
bigBed broadPeak
160
txt
64
xls
17
bedpe bed3+
15
hic
11
bed bedMethyl
11
bigBed bedMethyl
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
2970
Homo sapiens
Biosample type
2585
tissue
1052
primary cell
662
cell line
394
in vitro differentiated cells
10
stem cell
Organ
634
connective tissue
500
pancreas
479
adipose tissue
368
liver
295
kidney
273
heart
226
brain
158
bone element
110
limb
76
blood vessel
76
vasculature
68
musculature of body
67
artery
56
eye
43
nerve
39
epithelium
29
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2882
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1971
GRCh38
1899
hg19
4
hg18
Lab
2573
AMP-T2D consortium
142
Katalin Susztak, Upenn
99
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
206
inconsistent ontology term
27
inconsistent control
11
audit script error
Audit category:
32
missing controlled_by
Audit category:
23
inconsistent control read length
1
inconsistent assembly
month_released!
July, 2019
May, 2019
BIOSAMPLE
ASSAY
2979 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
snATAC-seq
Hi-C
WGBS
RRBS
GRO-seq
MeRIP-seq
snDrop-seq
Capture-C
FAIRE-seq
tissue
islet of Langerhans
292
71
68
6
1
4
7
3
4
1
adipose tissue
382
2
3
1
3
liver
165
145
20
1
2
1
1
3
1
kidney
49
27
75
64
13
6
1
bone element
84
+ See 168 more…
in vitro differentiated cells
adipocyte
5
67
8
1
1
cardiomyocytes
59
3
embryonic stem cell
7
40
6
1
neural progenitor cell
7
21
10
pancreatic endoderm
4
18
1
+ See 31 more…
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