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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ATAC-seq
31
total RNA-seq
24
pCHi-C
10
Hi-C
3
single cell RNA-seq
2
ChIP-seq
Assay category
38
DNA accessibility
34
Transcription
10
3D chromatin structure
2
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
571
February, 2021
352
August, 2017
271
August, 2021
250
October, 2019
193
May, 2020
172
May, 2021
163
June, 2019
120
July, 2018
115
May, 2019
111
February, 2023
91
December, 2017
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
39
February, 2018
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
January, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
November, 2020
1
August, 2018
1
August, 2022
Available data
55
bam
51
tsv
32
bigWig
27
bed narrowPeak
12
bedpe bed3+
10
hic
2
ibed
Organism
108
Homo sapiens
Biosample type
95
tissue
27
cell line
13
in vitro differentiated cells
4
stem cell
1
primary cell
Organ
48
pancreas
14
kidney
7
heart
5
musculature of body
3
adipose tissue
3
blood vessel
3
connective tissue
3
liver
3
vasculature
2
brain
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
104
AMP
4
T1D
Genome assembly (visualization)
70
hg19
67
GRCh38
Lab
94
AMP-T2D consortium
14
Katalin Susztak, Upenn
Audit category:
15
inconsistent ontology term
BIOSAMPLE
ASSAY
108 results
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Clear Filters
ATAC-seq
total RNA-seq
pCHi-C
Hi-C
single cell RNA-seq
ChIP-seq
tissue
islet of Langerhans
21
21
1
2
kidney
11
3
psoas muscle
2
1
2
aorta
1
1
1
heart left ventricle
1
1
1
+ See 18 more…
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
cardiomyocytes (cardiac muscle cell)
1
2
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
See all biosamples
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