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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
379
ChIP-seq
Assay category
379
DNA binding
Target of assay
740
histone modification
739
histone
379
narrow histone mark
359
broad histone mark
224
control
143
transcription factor
39
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
129
October, 2019
66
August, 2017
33
May, 2019
28
November, 2017
27
May, 2020
23
April, 2019
15
December, 2017
15
May, 2024
11
May, 2021
11
October, 2018
8
February, 2018
7
August, 2021
2
January, 2019
2
March, 2020
2
October, 2017
Available data
308
bigWig
306
bed narrowPeak
284
bam
122
tagAlign
113
bigBed narrowPeak
61
fastq
15
bed broadPeak
10
bed bed3+
1
tagAlign bed3+
Organism
377
Homo sapiens
Biosample type
324
tissue
115
primary cell
55
in vitro differentiated cells
19
cell line
1
stem cell
Organ
114
brain
49
liver
38
heart
33
pancreas
29
connective tissue
18
blood vessel
18
vasculature
15
limb
12
adipose tissue
10
kidney
9
musculature of body
8
embryo
8
epithelium
8
nerve
6
artery
4
gonad
4
ovary
2
eye
2
spleen
1
lymph node
1
pituitary gland
Project
377
AMP
2
T1D
Genome assembly (visualization)
291
GRCh38
279
hg19
Lab
354
AMP-T2D consortium
15
Patrick T. Ellinor, Broad
10
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
5
inconsistent control read length
organ_slims!
esophagus
BIOSAMPLE
ASSAY
379 results
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Clear Filters
ChIP-seq
tissue
liver
42
islet of Langerhans
37
left cardiac atrium
15
subcutaneous abdominal adipose tissue
11
kidney
10
+ See 100 more…
in vitro differentiated cells
adipocyte
16
embryonic stem cell
11
neural progenitor cell
7
pancreatic endoderm
6
hepatocyte
5
+ See 7 more…
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