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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
ChIP-seq
25
ATAC-seq
9
total RNA-seq
4
Hi-C
4
pCHi-C
2
Capture-C
2
single cell RNA-seq
Assay category
52
DNA binding
25
DNA accessibility
11
Transcription
4
3D chromatin structure
Target of assay
33
histone
33
histone modification
19
broad histone mark
14
narrow histone mark
12
transcription factor
7
control
5
RNA binding protein
Date released
47
May, 2021
16
February, 2023
14
August, 2017
6
March, 2020
5
August, 2021
4
February, 2021
4
October, 2019
2
December, 2019
Available data
bam
259
bigWig
fastq
132
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
98
Homo sapiens
Biosample type
825
tissue
303
primary cell
98
in vitro differentiated cells
78
cell line
6
stem cell
Organ
37
connective tissue
Project
98
AMP
Genome assembly (visualization)
33
hg19
Lab
47
Kyle Gaulton, UCSD
44
AMP-T2D consortium
7
Struan F.A. Grant, CHOP
Audit category:
14
inconsistent ontology term
2
audit script error
files.file_type!
bam
fastq
organ_slims!
brain
BIOSAMPLE
ASSAY
98 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
pCHi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
37
6
5
1
adipocyte
14
8
1
1
cardiomyocytes (cardiac muscle cell)
2
2
2
chondrocyte
5
immature adipocyte
2
2
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