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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
4
total RNA-seq
2
single cell RNA-seq
1
ChIP-seq
Assay category
15
DNA accessibility
6
Transcription
4
3D chromatin structure
1
DNA binding
Target of assay
1
broad histone mark
1
histone
1
histone modification
Date released
13
February, 2023
6
March, 2020
4
February, 2021
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
1
August, 2021
Available data
bam
229
bigWig
129
tsv
122
fastq
110
bed narrowPeak
tagAlign
23
bed bed3+
7
bedpe bed3+
5
bed bed3
4
bed bedgraph
4
hic
3
bigBed narrowPeak
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
35
Homo sapiens
Biosample type
458
tissue
83
primary cell
35
in vitro differentiated cells
11
cell line
5
stem cell
Organ
20
connective tissue
1
adipose tissue
1
embryo
Project
35
AMP
Genome assembly (visualization)
21
hg19
4
hg18
Lab
47
Kyle Gaulton, UCSD
35
AMP-T2D consortium
7
Struan F.A. Grant, CHOP
Audit category:
13
inconsistent ontology term
2
audit script error
files.file_type!
bam
tagAlign
organ_slims!
epithelium
BIOSAMPLE
ASSAY
35 results
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ATAC-seq
pCHi-C
GRO-seq
Hi-C
total RNA-seq
single cell RNA-seq
ChIP-seq
in vitro differentiated cells
adipocyte
7
1
cardiomyocytes (cardiac muscle cell)
2
2
2
chondrocyte
5
immature adipocyte
2
2
lymphocyte of B lineage (iPSC)
1
1
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