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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
ChIP-seq
25
ATAC-seq
9
total RNA-seq
5
pCHi-C
4
Hi-C
3
GRO-seq
2
Capture-C
2
single cell RNA-seq
Assay category
52
DNA binding
25
DNA accessibility
11
Transcription
4
3D chromatin structure
Target of assay
33
histone
33
histone modification
19
broad histone mark
14
narrow histone mark
12
transcription factor
7
control
5
RNA binding protein
Date released
47
May, 2021
16
February, 2023
14
August, 2017
6
March, 2020
5
August, 2021
4
February, 2021
4
October, 2019
3
January, 2018
2
December, 2019
1
August, 2018
Available data
bam
238
bigWig
125
tsv
118
bed narrowPeak
114
fastq
40
tagAlign
22
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
102
Homo sapiens
Biosample type
870
tissue
479
primary cell
102
in vitro differentiated cells
79
cell line
7
stem cell
Organ
38
connective tissue
1
adipose tissue
embryo
Project
102
AMP
Genome assembly (visualization)
33
hg19
3
hg18
Lab
48
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
14
inconsistent ontology term
2
audit script error
files.file_type!
bam
vcf
organ_slims!
embryo
BIOSAMPLE
ASSAY
102 results
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ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
Hi-C
GRO-seq
Capture-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
37
6
5
1
adipocyte
14
8
1
1
cardiomyocytes (cardiac muscle cell)
2
2
2
chondrocyte
5
immature adipocyte
2
2
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