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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ChIP-seq
25
ATAC-seq
9
total RNA-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
38
DNA binding
25
DNA accessibility
11
Transcription
4
3D chromatin structure
Target of assay
33
histone
33
histone modification
19
broad histone mark
narrow histone mark
12
transcription factor
7
control
5
RNA binding protein
Date released
37
May, 2021
16
February, 2023
10
August, 2017
6
March, 2020
5
August, 2021
4
February, 2021
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
Available data
bam
219
bigWig
131
tsv
108
fastq
92
bed narrowPeak
28
tagAlign
21
bed bed3+
12
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
89
Homo sapiens
Biosample type
789
tissue
467
primary cell
89
in vitro differentiated cells
77
cell line
7
stem cell
Organ
34
connective tissue
1
adipose tissue
1
embryo
Project
89
AMP
Genome assembly (visualization)
33
hg19
4
hg18
Lab
45
AMP-T2D consortium
37
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
14
inconsistent ontology term
2
audit script error
files.file_type!
bam
vcf
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
89 results
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ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
27
6
5
1
adipocyte
10
8
1
1
cardiomyocytes (cardiac muscle cell)
2
2
2
chondrocyte
5
immature adipocyte
2
2
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