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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
ChIP-seq
20
ATAC-seq
9
total RNA-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
Assay category
52
DNA binding
20
DNA accessibility
11
Transcription
4
3D chromatin structure
Target of assay
33
histone
33
histone modification
19
broad histone mark
14
narrow histone mark
12
transcription factor
7
control
5
RNA binding protein
Date released
47
May, 2021
14
August, 2017
13
February, 2023
6
March, 2020
4
February, 2021
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
1
August, 2021
Available data
bam
234
bigWig
129
tsv
122
fastq
110
bed narrowPeak
37
tagAlign
23
bed bed3+
7
bedpe bed3+
5
bed bed3
4
bed bedgraph
4
hic
3
bigBed narrowPeak
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
96
Homo sapiens
Biosample type
556
tissue
142
primary cell
96
in vitro differentiated cells
16
cell line
5
stem cell
Organ
34
connective tissue
1
adipose tissue
1
embryo
Project
96
AMP
Genome assembly (visualization)
26
hg19
4
hg18
Lab
49
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
13
inconsistent ontology term
2
audit script error
files.file_type!
bam
organ_slims!
epithelium
BIOSAMPLE
ASSAY
96 results
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ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
37
5
5
1
adipocyte
14
7
1
cardiomyocytes (cardiac muscle cell)
2
2
2
chondrocyte
5
immature adipocyte
2
2
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