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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 52ChIP-seq
  • 25ATAC-seq
  • 9total RNA-seq
  • 5pCHi-C
  • 4GRO-seq
  • 4Hi-C
  • 2Capture-C
  • 2single cell RNA-seq
Assay category
  • 52DNA binding
  • 25DNA accessibility
  • 11Transcription
  • 43D chromatin structure
Target of assay
  • 33histone
  • 33histone modification
  • 19broad histone mark
  • 14narrow histone mark
  • 12transcription factor
  • 7control
  • 5RNA binding protein
Date released
  • 47May, 2021
  • 16February, 2023
  • 14August, 2017
  • 6March, 2020
  • 5August, 2021
  • 4February, 2021
  • 4January, 2018
  • 4October, 2019
  • 2December, 2019
  • 1August, 2018
Available data
  • bam
  • 259bigWig
  • 141fastq
  • 132bed narrowPeak
  • 131tsv
  • 40tagAlign
  • 25bed bed3+
  • 17bigBed narrowPeak
  • 7bed bedgraph
  • 7bedpe bed3+
  • 5bed bed3
  • 4hic
  • 3txt
  • 2ibed
  • 1bed broadPeak
  • 1bigBed broadPeak
Organism
  • 103Homo sapiens
Biosample type
  • 870tissue
  • 479primary cell
  • 103in vitro differentiated cells
  • 80cell line
  • 7stem cell
Organ
  • 38connective tissue
  • 1adipose tissue
  • 1embryo
Project
  • 103AMP
Genome assembly (visualization)
  • 33hg19
  • 4hg18
Lab
  • 49AMP-T2D consortium
  • 47Kyle Gaulton, UCSD
  • 7Struan F.A. Grant, CHOP
Audit category:
  • 14inconsistent ontology term
  • 2audit script error
files.file_type!
  • bam
BIOSAMPLE
ASSAY

103 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell37651
adipocyte14811
cardiomyocytes (cardiac muscle cell)222
chondrocyte5
immature adipocyte22
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