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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
total RNA-seq
74
ChIP-seq
5
ATAC-seq
Assay category
84
Transcription
74
DNA binding
5
DNA accessibility
Target of assay
37
histone
37
histone modification
27
transcription factor
20
narrow histone mark
17
broad histone mark
10
control
7
RNA binding protein
1
chromatin remodeller
Date released
132
May, 2021
61
August, 2017
40
August, 2021
39
February, 2018
31
December, 2017
26
February, 2021
12
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
128
bam
123
bigWig
79
tsv
43
fastq
39
bed narrowPeak
14
bigBed narrowPeak
bed bed3+
6
tagAlign
Organism
163
Homo sapiens
Biosample type
204
primary cell
163
in vitro differentiated cells
88
tissue
21
cell line
Organ
24
epithelium
15
liver
12
embryo
3
pancreas
1
connective tissue
1
heart
Project
163
AMP
Genome assembly (visualization)
115
hg19
110
GRCh38
Lab
116
AMP-T2D consortium
47
Kyle Gaulton, UCSD
Audit category:
72
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
5
inconsistent control read length
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
163 results
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total RNA-seq
ChIP-seq
ATAC-seq
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
5
hepatocyte
15
induced pluripotent stem cell
9
pancreatic endoderm
6
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