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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
160
ChIP-seq
130
total RNA-seq
38
ATAC-seq
5
pCHi-C
4
Hi-C
3
GRO-seq
2
single cell RNA-seq
1
DNase-seq
Assay category
160
DNA binding
132
Transcription
39
DNA accessibility
4
3D chromatin structure
Target of assay
94
histone
94
histone modification
49
broad histone mark
44
narrow histone mark
40
transcription factor
26
control
11
RNA binding protein
3
chromatin remodeller
Date released
130
May, 2021
61
August, 2017
40
August, 2021
26
February, 2018
26
February, 2021
21
December, 2017
12
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
3
January, 2018
2
December, 2019
1
August, 2018
Available data
263
bam
238
bigWig
125
tsv
118
bed narrowPeak
114
fastq
40
tagAlign
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
343
Homo sapiens
Biosample type
2570
tissue
1051
primary cell
562
cell line
343
in vitro differentiated cells
7
stem cell
Organ
84
connective tissue
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
343
AMP
Genome assembly (visualization)
254
hg19
228
GRCh38
3
hg18
Lab
291
AMP-T2D consortium
47
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
107
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
7
inconsistent control read length
files.file_type!
bed bed3+
organ_slims!
embryo
thymus
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
343 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
Hi-C
GRO-seq
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
60
5
7
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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