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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
total RNA-seq
78
ChIP-seq
35
ATAC-seq
4
Hi-C
4
pCHi-C
2
Capture-C
2
single cell RNA-seq
Assay category
101
Transcription
78
DNA binding
35
DNA accessibility
4
3D chromatin structure
Target of assay
47
histone
47
histone modification
25
broad histone mark
22
narrow histone mark
16
transcription factor
15
control
5
RNA binding protein
Date released
132
May, 2021
42
August, 2021
February, 2021
14
August, 2017
13
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
2
December, 2019
Available data
269
bam
237
bigWig
fastq
132
bed narrowPeak
109
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bedpe bed3+
5
bed bed3
4
hic
bed bedgraph
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
224
Homo sapiens
Biosample type
1692
tissue
621
primary cell
224
in vitro differentiated cells
139
cell line
6
stem cell
Organ
34
connective tissue
5
epithelium
3
pancreas
2
embryo
1
heart
Project
224
AMP
Genome assembly (visualization)
150
hg19
125
GRCh38
Lab
173
AMP-T2D consortium
47
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
92
inconsistent ontology term
2
audit script error
files.file_type!
bed bedgraph
fastq
month_released!
February, 2021
June, 2019
BIOSAMPLE
ASSAY
224 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
pCHi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
5
1
neural progenitor cell
7
21
10
adipocyte
1
14
4
1
cardiomyocytes (cardiac muscle cell)
3
1
2
2
2
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