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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
155
ChIP-seq
52
total RNA-seq
25
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
155
DNA binding
54
Transcription
26
DNA accessibility
4
3D chromatin structure
Target of assay
91
histone
91
histone modification
46
broad histone mark
44
narrow histone mark
33
transcription factor
31
control
6
RNA binding protein
3
chromatin remodeller
Date released
May, 2021
68
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
22
February, 2021
13
February, 2023
8
March, 2020
8
October, 2019
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
201
bam
170
bigWig
141
fastq
122
bed narrowPeak
52
tsv
34
tagAlign
25
bed bed3+
17
bigBed narrowPeak
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
250
Homo sapiens
Biosample type
2697
tissue
882
primary cell
624
cell line
250
in vitro differentiated cells
10
stem cell
Organ
92
connective tissue
27
embryo
19
epithelium
15
liver
1
adipose tissue
Project
250
AMP
Genome assembly (visualization)
196
hg19
176
GRCh38
4
hg18
Lab
246
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
41
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
files.file_type!
bed bedgraph
month_released!
May, 2021
November, 2019
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
250 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
4
1
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
1
hepatocyte
15
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