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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
135
total RNA-seq
35
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
195
DNA binding
137
Transcription
36
DNA accessibility
4
3D chromatin structure
Target of assay
111
histone
111
histone modification
56
broad histone mark
54
narrow histone mark
48
transcription factor
36
control
11
RNA binding protein
3
chromatin remodeller
Date released
128
May, 2021
68
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
22
February, 2021
13
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
287
bam
256
bigWig
141
fastq
130
bed narrowPeak
130
tsv
37
tagAlign
25
bed bed3+
17
bigBed narrowPeak
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
383
Homo sapiens
Biosample type
1959
tissue
729
primary cell
504
cell line
383
in vitro differentiated cells
10
stem cell
Organ
93
connective tissue
29
embryo
24
epithelium
15
liver
pancreas
1
adipose tissue
heart
Project
383
AMP
Genome assembly (visualization)
287
hg19
262
GRCh38
4
hg18
Lab
332
AMP-T2D consortium
47
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
114
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
files.file_type!
bed bedgraph
organ_slims!
heart
pancreas
BIOSAMPLE
ASSAY
383 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
4
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
5
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
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