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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
30
ATAC-seq
9
total RNA-seq
5
pCHi-C
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
70
DNA binding
30
DNA accessibility
11
Transcription
4
3D chromatin structure
Target of assay
36
control
34
histone
34
histone modification
19
broad histone mark
15
narrow histone mark
transcription factor
5
RNA binding protein
Date released
30
May, 2021
20
August, 2017
20
August, 2021
13
February, 2023
9
December, 2017
8
February, 2018
6
March, 2020
5
November, 2019
4
February, 2021
4
October, 2019
2
December, 2019
1
August, 2018
Available data
252
bam
bigWig
131
tsv
108
fastq
99
bed narrowPeak
34
tagAlign
19
bed bed3+
15
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
bed broadPeak
1
bigBed broadPeak
Organism
122
Homo sapiens
Biosample type
872
tissue
321
primary cell
122
in vitro differentiated cells
99
cell line
7
stem cell
Organ
40
connective tissue
8
embryo
4
epithelium
1
adipose tissue
1
liver
pancreas
Project
122
AMP
Genome assembly (visualization)
43
hg19
22
GRCh38
Lab
90
AMP-T2D consortium
30
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
22
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bed broadPeak
bigWig
organ_slims!
pancreas
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
122 results
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ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
26
5
1
adipocyte
20
5
1
1
neural progenitor cell
8
10
cardiomyocytes (cardiac muscle cell)
1
2
2
2
pancreatic endoderm
6
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