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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
130
total RNA-seq
76
ChIP-seq
42
ATAC-seq
5
pCHi-C
4
Hi-C
3
GRO-seq
2
Capture-C
2
single cell RNA-seq
Assay category
132
Transcription
76
DNA binding
42
DNA accessibility
4
3D chromatin structure
Target of assay
100
histone
histone modification
52
broad histone mark
47
narrow histone mark
46
transcription factor
30
control
11
RNA binding protein
3
chromatin remodeller
Date released
109
May, 2021
30
August, 2017
28
August, 2021
26
February, 2021
16
February, 2018
16
February, 2023
12
December, 2017
8
March, 2020
8
October, 2019
5
November, 2019
3
January, 2018
2
December, 2019
1
August, 2018
Available data
196
bam
171
bigWig
125
tsv
61
fastq
51
bed narrowPeak
16
bed bed3+
14
tagAlign
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
5
bigBed narrowPeak
4
hic
3
txt
2
ibed
bed broadPeak
1
bigBed broadPeak
Organism
264
Homo sapiens
Biosample type
1907
tissue
818
primary cell
571
cell line
264
in vitro differentiated cells
8
stem cell
Organ
59
connective tissue
embryo
9
epithelium
3
liver
2
pancreas
1
adipose tissue
1
heart
Project
264
AMP
Genome assembly (visualization)
209
hg19
176
GRCh38
3
hg18
Lab
230
AMP-T2D consortium
27
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
109
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
9
inconsistent control read length
files.file_type!
bed broadPeak
xls
organ_slims!
embryo
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
264 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
Hi-C
GRO-seq
Capture-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
5
30
8
1
embryonic stem cell
7
18
6
1
neural progenitor cell
7
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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