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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
ChIP-seq
17
ATAC-seq
9
total RNA-seq
2
Capture-C
1
pCHi-C
Assay category
45
DNA binding
17
DNA accessibility
9
Transcription
Target of assay
37
histone
37
histone modification
transcription factor
20
broad histone mark
16
narrow histone mark
8
control
4
RNA binding protein
2
chromatin remodeller
Date released
45
August, 2017
13
February, 2023
8
February, 2021
4
August, 2021
2
October, 2019
1
August, 2018
1
May, 2021
Available data
37
bam
35
bigWig
33
fastq
28
bed narrowPeak
14
tagAlign
7
bed bed3+
5
bed bed3
5
tsv
4
bed bedgraph
3
bigBed narrowPeak
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
Organism
74
Homo sapiens
Biosample type
527
tissue
74
in vitro differentiated cells
32
primary cell
1
stem cell
Organ
74
connective tissue
26
embryo
21
epithelium
13
liver
2
pancreas
1
adipose tissue
1
heart
Project
74
AMP
Genome assembly (visualization)
50
hg19
31
GRCh38
Lab
70
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
4
inconsistent ontology term
files.file_type!
bed broadPeak
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
74 results
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ChIP-seq
ATAC-seq
total RNA-seq
Capture-C
pCHi-C
in vitro differentiated cells
adipocyte
45
8
5
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
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