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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
17
ATAC-seq
9
total RNA-seq
4
GRO-seq
4
Hi-C
3
pCHi-C
2
Capture-C
Assay category
88
DNA binding
17
DNA accessibility
9
Transcription
4
3D chromatin structure
Target of assay
37
control
34
histone
34
histone modification
19
broad histone mark
17
transcription factor
15
narrow histone mark
5
RNA binding protein
Date released
48
May, 2021
25
August, 2017
14
February, 2023
10
August, 2021
9
December, 2017
8
February, 2018
February, 2021
4
January, 2018
4
March, 2020
4
October, 2019
1
August, 2018
Available data
269
bam
237
bigWig
141
fastq
bed narrowPeak
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bedpe bed3+
5
bed bed3
4
hic
3
bed bedgraph
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
127
Homo sapiens
Biosample type
632
tissue
483
primary cell
135
cell line
127
in vitro differentiated cells
4
stem cell
Organ
43
connective tissue
9
embryo
4
epithelium
1
adipose tissue
1
liver
1
pancreas
Project
127
AMP
Genome assembly (visualization)
35
hg19
10
GRCh38
4
hg18
Lab
77
AMP-T2D consortium
47
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
12
inconsistent ontology term
Audit category:
6
missing controlled_by
files.file_type!
bed narrowPeak
tsv
month_released!
February, 2021
BIOSAMPLE
ASSAY
127 results
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ChIP-seq
ATAC-seq
total RNA-seq
GRO-seq
Hi-C
pCHi-C
Capture-C
in vitro differentiated cells
embryonic stem cell
38
5
5
adipocyte
25
3
1
1
neural progenitor cell
8
pancreatic endoderm
6
1
chondrocyte
5
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