Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
21
ATAC-seq
9
total RNA-seq
4
GRO-seq
4
Hi-C
3
pCHi-C
2
Capture-C
Assay category
88
DNA binding
21
DNA accessibility
9
Transcription
4
3D chromatin structure
Target of assay
37
control
34
histone
34
histone modification
19
broad histone mark
17
transcription factor
15
narrow histone mark
5
RNA binding protein
Date released
48
May, 2021
25
August, 2017
14
February, 2023
10
August, 2021
9
December, 2017
8
February, 2018
4
February, 2021
4
January, 2018
4
March, 2020
4
October, 2019
1
August, 2018
Available data
291
bam
259
bigWig
141
fastq
bed narrowPeak
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
131
Homo sapiens
Biosample type
716
tissue
523
primary cell
139
cell line
131
in vitro differentiated cells
4
stem cell
Organ
47
connective tissue
9
embryo
4
epithelium
1
adipose tissue
1
liver
1
pancreas
Project
131
AMP
Genome assembly (visualization)
39
hg19
10
GRCh38
4
hg18
Lab
81
AMP-T2D consortium
47
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
12
inconsistent ontology term
Audit category:
6
missing controlled_by
files.file_type!
bed narrowPeak
tsv
organ_slims!
pituitary gland
BIOSAMPLE
ASSAY
131 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
GRO-seq
Hi-C
pCHi-C
Capture-C
in vitro differentiated cells
embryonic stem cell
38
5
5
adipocyte
25
7
1
1
neural progenitor cell
8
pancreatic endoderm
6
1
chondrocyte
5
+ See 16 more…
See all biosamples
Download