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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
total RNA-seq
88
ChIP-seq
21
ATAC-seq
4
GRO-seq
2
Capture-C
2
Hi-C
2
single cell RNA-seq
1
pCHi-C
Assay category
136
Transcription
88
DNA binding
21
DNA accessibility
2
3D chromatin structure
Target of assay
37
control
34
histone
34
histone modification
19
broad histone mark
17
transcription factor
15
narrow histone mark
5
RNA binding protein
Date released
127
May, 2021
26
February, 2021
25
August, 2017
23
February, 2018
17
August, 2021
14
February, 2023
9
December, 2017
March, 2020
6
October, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
289
bam
257
bigWig
141
fastq
bed narrowPeak
127
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
5
bed bed3
3
bedpe bed3+
3
txt
2
hic
1
bed broadPeak
1
bigBed broadPeak
Organism
254
Homo sapiens
Biosample type
1733
tissue
791
primary cell
254
in vitro differentiated cells
248
cell line
4
stem cell
Organ
52
connective tissue
15
embryo
6
epithelium
1
adipose tissue
1
heart
1
liver
1
pancreas
Project
254
AMP
Genome assembly (visualization)
160
hg19
135
GRCh38
4
hg18
Lab
204
AMP-T2D consortium
47
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
95
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
files.file_type!
bed narrowPeak
month_released!
March, 2020
May, 2019
BIOSAMPLE
ASSAY
254 results
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total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
Capture-C
Hi-C
single cell RNA-seq
pCHi-C
in vitro differentiated cells
cardiomyocytes
59
embryonic stem cell
7
38
5
adipocyte
5
25
7
1
cardiac precursors (cardiac muscle cell)
19
1
neural progenitor cell
7
8
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