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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
132
total RNA-seq
131
ChIP-seq
30
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
134
Transcription
131
DNA binding
30
DNA accessibility
4
3D chromatin structure
Target of assay
75
histone
75
histone modification
39
narrow histone mark
36
broad histone mark
29
control
27
transcription factor
7
RNA binding protein
1
chromatin remodeller
Date released
132
May, 2021
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
237
bam
208
bigWig
131
tsv
87
bed narrowPeak
87
fastq
26
tagAlign
16
bigBed narrowPeak
14
bed bed3+
7
bedpe bed3+
4
bed bedgraph
4
hic
2
ibed
Organism
310
Homo sapiens
Biosample type
2396
tissue
941
primary cell
656
cell line
310
in vitro differentiated cells
10
stem cell
Organ
29
embryo
24
epithelium
16
connective tissue
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
310
AMP
Genome assembly (visualization)
236
hg19
216
GRCh38
4
hg18
Lab
259
AMP-T2D consortium
47
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
110
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
files.file_type!
bedpe
month_released!
August, 2017
February, 2023
organ_slims!
skin of body
BIOSAMPLE
ASSAY
310 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
7
40
5
1
neural progenitor cell
7
21
10
pancreatic endoderm
4
18
1
cardiac precursors (cardiac muscle cell)
19
1
1
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