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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
155
ChIP-seq
136
total RNA-seq
42
ATAC-seq
4
GRO-seq
2
Capture-C
2
pCHi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
155
DNA binding
138
Transcription
43
DNA accessibility
Target of assay
88
histone
88
histone modification
45
broad histone mark
42
narrow histone mark
38
transcription factor
29
control
9
RNA binding protein
2
chromatin remodeller
Date released
132
May, 2021
68
August, 2017
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
6
October, 2019
5
November, 2019
4
January, 2018
4
March, 2020
2
December, 2019
Available data
248
bam
225
bigWig
131
tsv
98
bed narrowPeak
98
fastq
40
tagAlign
13
bed bed3+
7
bed bedgraph
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
344
Homo sapiens
Biosample type
2719
tissue
1084
primary cell
658
cell line
344
in vitro differentiated cells
5
stem cell
Organ
96
connective tissue
16
embryo
5
epithelium
3
pancreas
1
heart
Project
344
AMP
Genome assembly (visualization)
253
hg19
227
GRCh38
4
hg18
Lab
290
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
105
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
8
inconsistent control read length
files.file_type!
bedpe bed3+
lab.title!
Anna Gloyn, Oxford
month_released!
December, 2017
BIOSAMPLE
ASSAY
344 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Capture-C
pCHi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
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