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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
160
ChIP-seq
121
total RNA-seq
40
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
160
DNA binding
123
Transcription
40
DNA accessibility
4
3D chromatin structure
Target of assay
84
histone
84
histone modification
47
transcription factor
42
narrow histone mark
41
broad histone mark
29
control
9
RNA binding protein
2
chromatin remodeller
Date released
132
May, 2021
67
August, 2017
42
August, 2021
February, 2018
29
December, 2017
26
February, 2021
16
February, 2023
8
March, 2020
6
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
252
bam
228
bigWig
116
bed narrowPeak
116
tsv
102
fastq
40
tagAlign
25
bed bed3+
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
338
Homo sapiens
Biosample type
2216
tissue
920
primary cell
338
in vitro differentiated cells
307
cell line
10
stem cell
Organ
94
connective tissue
16
embryo
10
epithelium
3
pancreas
1
adipose tissue
1
heart
1
liver
Project
338
AMP
Genome assembly (visualization)
249
hg19
219
GRCh38
4
hg18
Lab
284
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
115
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
15
inconsistent control read length
files.file_type!
bigBed narrowPeak
tar
month_released!
February, 2018
September, 2020
BIOSAMPLE
ASSAY
338 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
adipocyte
67
5
6
1
cardiomyocytes
3
59
embryonic stem cell
37
5
6
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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