Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
30
ATAC-seq
9
total RNA-seq
5
pCHi-C
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
49
DNA binding
30
DNA accessibility
11
Transcription
4
3D chromatin structure
Target of assay
37
control
histone
34
histone modification
19
broad histone mark
15
narrow histone mark
12
transcription factor
5
RNA binding protein
Date released
23
May, 2021
19
August, 2021
13
February, 2023
8
August, 2017
8
December, 2017
8
February, 2018
6
March, 2020
5
November, 2019
4
February, 2021
4
October, 2019
2
December, 2019
1
August, 2018
Available data
212
bam
bigWig
131
tsv
76
fastq
54
bed narrowPeak
17
bed bed3+
14
tagAlign
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
5
bigBed narrowPeak
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
101
Homo sapiens
Biosample type
897
tissue
468
primary cell
138
cell line
101
in vitro differentiated cells
7
stem cell
Organ
28
connective tissue
7
embryo
4
epithelium
1
adipose tissue
1
liver
1
pancreas
Project
101
AMP
Genome assembly (visualization)
43
hg19
22
GRCh38
Lab
77
AMP-T2D consortium
22
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
22
inconsistent ontology term
2
audit script error
files.file_type!
bigWig
organ_slims!
thymus
target.investigated_as!
histone
recombinant protein
BIOSAMPLE
ASSAY
101 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
18
5
1
neural progenitor cell
7
10
adipocyte
8
5
1
1
cardiomyocytes (cardiac muscle cell)
1
2
2
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
+ See 16 more…
See all biosamples
Download