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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 83ChIP-seq
  • 30ATAC-seq
  • 9total RNA-seq
  • 5pCHi-C
  • 4Hi-C
  • 2Capture-C
  • 2single cell RNA-seq
Assay category
  • 83DNA binding
  • 30DNA accessibility
  • 11Transcription
  • 43D chromatin structure
Target of assay
  • 37control
  • 34histone
  • 34histone modification
  • 19broad histone mark
  • 15narrow histone mark
  • 12transcription factor
  • 5RNA binding protein
Date released
  • 43May, 2021
  • 20August, 2017
  • 20August, 2021
  • 13February, 2023
  • 9December, 2017
  • 8February, 2018
  • 6March, 2020
  • 5November, 2019
  • 4February, 2021
  • 4October, 2019
  • 2December, 2019
  • 1August, 2018
Available data
  • 291bam
  • bigWig
  • 141fastq
  • 132bed narrowPeak
  • 131tsv
  • 40tagAlign
  • 25bed bed3+
  • 17bigBed narrowPeak
  • 7bed bedgraph
  • 7bedpe bed3+
  • 5bed bed3
  • 4hic
  • 3txt
  • 2ibed
  • 1bed broadPeak
  • 1bigBed broadPeak
Organism
  • 135Homo sapiens
Biosample type
  • 1005tissue
  • 475primary cell
  • 140cell line
  • 135in vitro differentiated cells
  • 7stem cell
Organ
  • 40connective tissue
  • 8embryo
  • 4epithelium
  • 1adipose tissue
  • 1liver
  • 1pancreas
Project
  • 135AMP
Genome assembly (visualization)
  • 43hg19
  • 22GRCh38
Lab
  • 91AMP-T2D consortium
  • 42Kyle Gaulton, UCSD
  • 2Struan F.A. Grant, CHOP
Audit category:
  • 22inconsistent ontology term
  • 2audit script error
Audit category:
  • 1missing controlled_by
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

135 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell3851
adipocyte20511
neural progenitor cell810
cardiomyocytes (cardiac muscle cell)1222
pancreatic endoderm6
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