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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
159
ChIP-seq
121
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
159
DNA binding
123
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
84
histone
84
histone modification
47
transcription factor
42
narrow histone mark
41
broad histone mark
28
control
9
RNA binding protein
2
chromatin remodeller
Date released
132
May, 2021
68
August, 2017
42
August, 2021
February, 2018
28
December, 2017
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
237
bam
214
bigWig
116
tsv
102
bed narrowPeak
87
fastq
40
tagAlign
25
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
340
Homo sapiens
Biosample type
2247
tissue
1019
primary cell
340
in vitro differentiated cells
261
cell line
10
stem cell
Organ
97
connective tissue
24
epithelium
16
embryo
liver
3
pancreas
1
adipose tissue
1
heart
Project
340
AMP
Genome assembly (visualization)
252
hg19
220
GRCh38
4
hg18
Lab
286
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
115
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
15
inconsistent control read length
files.file_type!
csv
month_released!
February, 2018
June, 2019
organ_slims!
large intestine
liver
BIOSAMPLE
ASSAY
340 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
37
5
6
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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