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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
121
total RNA-seq
42
ATAC-seq
38
ChIP-seq
4
Hi-C
4
pCHi-C
2
Capture-C
2
single cell RNA-seq
Assay category
123
Transcription
42
DNA accessibility
38
DNA binding
4
3D chromatin structure
Target of assay
21
histone
21
histone modification
12
transcription factor
11
broad histone mark
10
narrow histone mark
5
RNA binding protein
5
control
Date released
126
May, 2021
26
February, 2021
22
August, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
2
December, 2019
Available data
248
bam
225
bigWig
131
tsv
98
bed narrowPeak
fastq
tagAlign
13
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
213
Homo sapiens
Biosample type
2137
tissue
591
primary cell
227
cell line
213
in vitro differentiated cells
6
stem cell
Organ
28
connective tissue
2
embryo
2
epithelium
1
heart
Project
213
AMP
Genome assembly (visualization)
162
hg19
129
GRCh38
Lab
159
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
108
inconsistent ontology term
2
audit script error
files.file_type!
fastq
tagAlign
lab.title!
Karen Mohlke, UNC
month_released!
December, 2017
BIOSAMPLE
ASSAY
213 results
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total RNA-seq
ATAC-seq
ChIP-seq
Hi-C
pCHi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
embryonic stem cell
5
6
37
1
cardiac precursors (cardiac muscle cell)
19
1
1
neural progenitor cell
7
10
1
adipocyte
5
8
1
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