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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 121total RNA-seq
  • 78ChIP-seq
  • 42ATAC-seq
  • 4Hi-C
  • 4pCHi-C
  • 2Capture-C
  • 2single cell RNA-seq
Assay category
  • 123Transcription
  • 78DNA binding
  • 42DNA accessibility
  • 43D chromatin structure
Target of assay
  • 47histone
  • 47histone modification
  • 25broad histone mark
  • 22narrow histone mark
  • 16transcription factor
  • 15control
  • 5RNA binding protein
Date released
  • 132May, 2021
  • 42August, 2021
  • 26February, 2021
  • 16February, 2023
  • 14August, 2017
  • 8March, 2020
  • 8October, 2019
  • 5November, 2019
  • 2December, 2019
Available data
  • 291bam
  • 259bigWig
  • fastq
  • 132bed narrowPeak
  • 131tsv
  • 40tagAlign
  • 25bed bed3+
  • 17bigBed narrowPeak
  • 7bed bedgraph
  • 7bedpe bed3+
  • 5bed bed3
  • 4hic
  • 3txt
  • 2ibed
  • 1bed broadPeak
  • 1bigBed broadPeak
Organism
  • 253Homo sapiens
Biosample type
  • 2400tissue
  • 679primary cell
  • 253in vitro differentiated cells
  • 235cell line
  • 6stem cell
Organ
  • 42connective tissue
  • 5epithelium
  • 3pancreas
  • 2embryo
  • 1heart
Project
  • 253AMP
Genome assembly (visualization)
  • 179hg19
  • 147GRCh38
Lab
  • 199AMP-T2D consortium
  • 47Kyle Gaulton, UCSD
  • 7Struan F.A. Grant, CHOP
Audit category:
  • 111inconsistent ontology term
  • 2audit script error
files.file_type!
  • fastq
BIOSAMPLE
ASSAY

253 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
pCHi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes593
embryonic stem cell53761
neural progenitor cell72110
adipocyte51481
cardiac precursors (cardiac muscle cell)1911
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