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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
161
ChIP-seq
127
total RNA-seq
23
ATAC-seq
5
pCHi-C
4
GRO-seq
2
single cell RNA-seq
1
DNase-seq
Assay category
161
DNA binding
129
Transcription
24
DNA accessibility
Target of assay
92
histone
92
histone modification
46
broad histone mark
45
narrow histone mark
37
transcription factor
32
control
6
RNA binding protein
3
chromatin remodeller
Date released
85
May, 2021
68
August, 2017
43
December, 2017
39
February, 2018
38
August, 2021
26
February, 2021
February, 2023
6
March, 2020
6
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
291
bam
249
bigWig
141
fastq
131
tsv
128
bed narrowPeak
40
tagAlign
19
bed bed3+
17
bigBed narrowPeak
7
bedpe bed3+
4
bed bedgraph
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
323
Homo sapiens
Biosample type
2340
tissue
613
cell line
510
primary cell
323
in vitro differentiated cells
8
stem cell
Organ
80
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
323
AMP
Genome assembly (visualization)
272
hg19
265
GRCh38
4
hg18
Lab
323
AMP-T2D consortium
47
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
0
Stephen Parker, UMich
Audit category:
106
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
files.file_type!
hic
month_released!
February, 2023
BIOSAMPLE
ASSAY
323 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
4
6
1
cardiomyocytes
3
59
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
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