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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
106
ChIP-seq
42
ATAC-seq
5
pCHi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
138
Transcription
106
DNA binding
43
DNA accessibility
Target of assay
112
histone
112
histone modification
56
broad histone mark
narrow histone mark
49
transcription factor
control
11
RNA binding protein
3
chromatin remodeller
Date released
115
May, 2021
44
August, 2017
28
August, 2021
26
February, 2021
23
February, 2018
22
December, 2017
16
February, 2023
6
March, 2020
6
October, 2019
5
November, 2019
January, 2018
2
December, 2019
1
August, 2018
Available data
220
bam
215
bigWig
131
tsv
92
bed narrowPeak
82
fastq
18
tagAlign
16
bed bed3+
12
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
294
Homo sapiens
Biosample type
2253
tissue
932
primary cell
557
cell line
294
in vitro differentiated cells
7
stem cell
Organ
73
connective tissue
13
embryo
12
epithelium
9
liver
1
adipose tissue
1
heart
1
pancreas
Project
294
AMP
Genome assembly (visualization)
248
hg19
220
GRCh38
Lab
255
AMP-T2D consortium
32
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
107
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
15
inconsistent control read length
files.file_type!
hic
month_released!
January, 2018
target.investigated_as!
control
narrow histone mark
BIOSAMPLE
ASSAY
294 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
5
43
8
1
1
embryonic stem cell
7
23
6
1
neural progenitor cell
7
7
10
cardiac precursors (cardiac muscle cell)
19
1
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