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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
92
ChIP-seq
25
ATAC-seq
4
GRO-seq
4
pCHi-C
2
single cell RNA-seq
Assay category
129
Transcription
92
DNA binding
25
DNA accessibility
Target of assay
75
histone
75
histone modification
narrow histone mark
36
broad histone mark
29
control
27
transcription factor
7
RNA binding protein
1
chromatin remodeller
Date released
120
May, 2021
31
August, 2021
31
February, 2018
30
December, 2017
18
February, 2021
6
March, 2020
5
November, 2019
4
January, 2018
4
October, 2019
3
February, 2023
2
December, 2019
Available data
203
bam
174
bigWig
126
tsv
65
fastq
59
bed narrowPeak
18
tagAlign
9
bigBed narrowPeak
8
bed bed3+
6
bedpe bed3+
hic
3
bed bedgraph
3
txt
2
ibed
Organism
254
Homo sapiens
Biosample type
1873
tissue
932
primary cell
641
cell line
254
in vitro differentiated cells
8
stem cell
Organ
connective tissue
21
embryo
16
epithelium
10
liver
2
pancreas
1
adipose tissue
1
heart
Project
254
AMP
Genome assembly (visualization)
192
hg19
183
GRCh38
4
hg18
Lab
214
AMP-T2D consortium
37
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
105
inconsistent ontology term
2
audit script error
Audit category:
9
inconsistent control read length
files.file_type!
hic
organ_slims!
connective tissue
nerve
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
254 results
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total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
pCHi-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
7
29
6
1
neural progenitor cell
7
14
10
cardiac precursors (cardiac muscle cell)
19
1
pancreatic endoderm
4
12
1
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